It does sound like you could have cross-linked repositories. If you’ve made ANY changes in your “new” repository – you might have made inadvertent changes in your “old” repostory instead. If so, can you do a restore of the production repository from a backup from just before your move, and complete the move correctly?
Please check the Supervisor FAQ: “How do I move my repository?” to see the step(s) that you probably missed.
Anita Craig 
(BOB member since 2002-06-17)